Figure S1B

Code

# Enrique Blanco Carmona
# e.blancocarmona@kitz-heidelberg.de
# PhD Student – Clinical Bioinformatics
# Division of Pediatric Neurooncology (B062)
# DKFZ-KiTZ | Germany

sample <- readRDS("/omics/odcf/analysis/OE0145_projects/idh_gliomas/Figures_Science/revision/IDH_gliomas_book/datasets/merged_primary_AS.rds")

# Colors to use.
cluster_cols <- c("Oligo program" = "#043362",                  
                  "Oligodendrocytes" = "#BC5210",            
                  "Astrocytes" = "#279185",                  
                  "Microglia" = "#7EB356",                   
                  "Pericytes" = "#AC70FF",                  
                  "Neurons" = "#544B81",                   
                  "Endothelial" = "#da627d",                 
                  "Astro program" = "#9A031E")

Code

p <- SCpubr::do_DimPlot(sample,
                        group.by = "first_labelling",
                        font.size = 20,
                        raster = TRUE,
                        raster.dpi = 2048,
                        pt.size = 4,
                        colors.use = cluster_cols,
                        legend.icon.size = 8,
                        legend.ncol = 2)